PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603931.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 261aa    MW: 29785.4 Da    PI: 7.5587
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.6e-141156146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
   XP_013603931.1 11 KGPWKAEEDEVLINHVKRYGPRDWSSIRSKGLLQRTGKSCRLRWVN 56
                     79*************************8887799**********87 PP

2Myb_DNA-binding461.2e-1467107345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++eE++  +d+  q+G++ W++Ia +++ gRt++++k++w 
   XP_013603931.1  67 KFSAEEEKTVIDLQSQFGNK-WARIATYLP-GRTDNDVKNFWS 107
                      79******************.*********.***********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-22559IPR009057Homeodomain-like
PROSITE profilePS5129421.325662IPR017930Myb domain
SuperFamilySSF466896.36E-289106IPR009057Homeodomain-like
SMARTSM007177.1E-111060IPR001005SANT/Myb domain
CDDcd001677.86E-111358No hitNo description
PfamPF139216.1E-121464No hitNo description
Gene3DG3DSA:1.10.10.606.3E-1960112IPR009057Homeodomain-like
PROSITE profilePS5129418.21663114IPR017930Myb domain
SMARTSM007178.5E-1364112IPR001005SANT/Myb domain
PfamPF002499.3E-1367107IPR001005SANT/Myb domain
CDDcd001675.40E-1067106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEATKKEEIK KGPWKAEEDE VLINHVKRYG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP  60
NLKNGCKFSA EEEKTVIDLQ SQFGNKWARI ATYLPGRTDN DVKNFWSSRL KRLARILHNS  120
SDASSSSCFN PKPNKGKNVK PIQSQSFGLV EEETRASSSS SKILDQVDEE ALIRSPELGI  180
KLENHQPFTF GTDLDDPFFY DILGPADSSV PLFGPPQPFF EPSPAPRRFR HVSKDDEESD  240
VFLHDFPADM FDQVDDQTRS P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-28811224126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893191e-149AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603931.10.0PREDICTED: transcription factor MYB57-like
TrEMBLA0A0D3DUL80.0A0A0D3DUL8_BRAOL; Uncharacterized protein
STRINGBra007536.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65512842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-116MYB family protein